My usual settings on the pedals on my board...
Digitech Whammy
Control Knob - Half Step Down, 5th/4th, and Major/Minor 3rds are what I use the most
BOSS PS-5 Super Shifter
Speed = all the way down
Level = all the way up
Key = E or D, major or minor
Pitch = 1 octave down
Modes = Trem Flutter (used for a vibrato), Whammy (used for dive bomb and temporary bass-range notes), and Harmonist (non-intelligent) are the settings I use most
Zvex Fuzz Factory
I'm going to have to load up a PDF of all the presets I use, as I use a LOT of them on this pedal, and change around a lot depending upon what amp or guitar I'm using, as the Fuzz Factory's versatility is beyond insane. Since I'm at work right now, I'll add it later.
Crybaby Classic Wah
It's either on, or off, usually off, since I seldom use a wah wah pedal.
EHX Stereo PolyChorus
Another pedal I have a TON of settings for. Between this and the Fuzz Factory, I could write a book. But typically, I have it set like this...
Mode = Chorus
Depth = 7:00
Rate = 7:00
Delay = off
Rate = Off
Sometimes I will turn the delay on for a slapback effect (ie. the reggae song one of my bands plays). The Delay is also what I use to do motorcycle noises in conjunction with the feedback knob (usually set to max and turned down to cut the noise off).
Behringer PH-9 Phaser
I'm usually going for an early Van-Halen phaser sound here. Sounds incredible with the Jaguar.
Swirl = Off
Speed = 9:00
DOD FX-75B Stereo Flanger
Delay = halfway
Rate = 7:45
Width = halfway
Regen = halfway
Mind that I also did modify the pot for the LFO sweep, making the Regen slightly more extreme, turned all the way up, the flanger's upswing sounds like a pressure washer against metal siding (he,he,he).
Behringer DD400 Digital Delay
Level = Halfway
Feedback = 7:00
Time = 10:30
Mode = 500ms Delay
This is for the really fast delay I use on solos to get this twisted "semi-reverse-guitar" thing going on. It's basically the same effect EVH uses on cathedral, and Brad Gillis used on the intro to Night Ranger's "Rumors in the Air", except at different tempos, I've found I can apply it differently, especially at slower tempos, I can make some really extreme and complex rhythmic changes during a solo using this effect.
I'm beginning to think I need to make a sysex file thread for the digital devices some of us use, as I do most of my programming of my non-pedal effects (Behringer V-Amp Pro, and Behringer Virtualizer Pro) though the computer using MIDI, and backup my presets using the MIDI functions.